ChromasPro

ChromasPro

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ChromasPro 2.1.3
ChromasPro適用於測序項目多達幾個鹼基,以及基本的序列編輯和分析。

具體功能如下:
以應用生物系統、Staden色譜圖(SCF)、MegaBace (esd)、FASTA、EMBL、GenBank、SwissProt,、GenPept、GCG RSF和純文本格式打開和保存序列。
將重疊序列組裝一致,自動顯示含糊不清的序列並編輯。
用高質量數據自動消除低質量序列並提高序列集合。
查看檢測基因型文件。
生成限制位點和片段圖,並且列舉切割、無切割和片段。
染色體圖開放閱讀框,借助G+C框架圖,點擊一下即可翻譯ORFs。
打印色譜圖,限制位點和片段圖,並且打開閱讀框架圖。
執行核苷和蛋白質BLAST,通過NCBI網站搜索。
通過ClustalW的界面執行多序列。
逆向&補充序列和色譜圖。
通過準確匹配或最佳隊列搜索序列。
當編輯核苷酸系列時顯示翻譯。
執行反向翻譯和標出核苷酸退化。
劃分蛋白質的親水性和抗原性。
複製色譜圖截面的圖形粘貼到文檔或演示文件中。

ChromasPro 2.x | 2.1 MB
ChromasPro is a practical tool for the users who need to manage multiple DNA sequencing projects. You can use this program to import the sequence details from multiple programs and file types. DNA sequencing allows biologists and other specialists to find out the exact order of nucleotides in a DNA molecule. The process can be completed by using various methods and applications that aim to increase the accuracy. This program aims to provide you with the required tools for analysing the imported sequences and editing the data in order to improve the sequence assembly. It is also able to detect overlapping sequences in order to display the ambiguities.

The interface is simple and allows you to quickly create a project and import the sequences that you need to analyze. Once loaded, you can assemble the sequences into contigs, edit the consensus file and export the entire alignment.

An important tool is the Restriction Analysis which enables you to search for certain elements in the nucleotide sequence. The program includes multiple databases of restriction enzymes and allows you to add new items by entering the recognition data.

Besides analyzing the nucleotide structure, the application is capable of formatting the data in order to easily publish your results or share them with other colleagues. Thus, you can export the sequence as a PDF or plain text file with minimum effort.

ChromasPro has the following features:
Open and save sequences in Applied Biosystems, Staden Chromatogram (SCF), MegaBace (.esd), 454 SFF, FASTA, FASTQ, EMBL, GenBank, SwissProt, GenPept, GCG RSF and plain text formats.
Assemble overlapping sequences into a consensus and automatically display ambiguities for editing.
Use quality data to automatically remove low quality sequence and improve sequence assembly.
View Genescan genotype files.
Generate restriction site and fragment maps, and list cutters, non-cutters and fragments.
Map open reading frames, aided by a G+C frame plot, and translate ORFs with one click.
Print chromatograms, restriction site and fragment maps, and open reading frame maps.
Perform nucleotide and protein BLAST searches through the NCBI web site.
Perform multiple alignments by interfacing with ClustalW.
Reverse & complement sequences and chromatograms.
Search for sequences by exact matching or optimal alignment.
Display translations when editing nucleotide sequences.
Perform reverse translations and plot nucleotide degeneracy.
Plot hydrophilicity and antigenicity of proteins.
Copy an image of a chromatogram section for pasting into documents or presentations.
OS : windows xp, Vista, 7 and 8
Language : English

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